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The foundational research for this type of data is typically published in journals like Nature . A core reference for the broader human project (GTEx) is "Genetic effects on gene expression across human tissues" published in Nature. 3. Software: Regulatory Genomics Toolbox (RGT) Download RGTX zip
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The descriptive paper "RGT: a toolbox for the integrative analysis of high throughput regulatory genomics data" can be accessed on ResearchGate . Download RGTX zip